I like your pipework, get some grease on it and the metal parts will look factory.
I notice you dont have an intercooler, what do you have planed to go in that vacant space where the spare tyre once lived?
An intercooler gives a very noticeable increase in torque on the old EA82T, especially if your timing is being retarded because of high inlet temps
As for your leaning out problem, i put that down to the engine taking on heaps more air than the factory ECU can account for. I seriously recommend an aftermarket engine management system. Even if it is a crude, old school analogue type (the ones that were tuned with a screwdriver) Microtech LT1 or similar.
Or be daring and go megasquirt, there are EA82T fuel and ignition maps for Megasquirt available on the USMB